**MetaAmp analysis results:**

Analysis name: mock

metaamp command: metaamp.pl -map mapping.txt -an mock -seqtype paired -seqformat fastq -s 0.97 -minoverlen 50 -maxdiffs 8 -trunclen 350 -maxee 1 -oligos oligos.txt -pdiffs 0 -email xdong@ucalgary.ca

Submitted by xdong@ucalgary.ca

Thu Mar 12 14:01:01 MDT 2020

Download a packaged file containing all results in this page

#### Input raw reads statistical summary

#### Reads statistical summary after get rid of primers

#### Reads statistical summary after paired end data merging

#### Reads statistical summary after quality trimming and filtering

### Without subsampling or rarefying

### With subsampling or rarefying

» otu and α-diversity measurements

» β-diversity measurements: otu association

- Spearman otu correlation coefficient
- Pearson otu correlation coefficient
- Kendall otu correlation coefficient

- Spearman otu correlation coefficient
- Pearson otu correlation coefficient
- Kendall otu correlation coefficient

» β-diversity measurements: PCoA analysis

- Jclass: pcoa.loadings & pcoa.axes
- Jest: pcoa.loadings & pcoa.axes
- Thetayc: pcoa.loadings & pcoa.axes
- Braycurtis: pcoa.loadings & pcoa.axes

- Jclass: pcoa.loadings & pcoa.axes
- Jest: pcoa.loadings & pcoa.axes
- Thetayc: pcoa.loadings & pcoa.axes
- Braycurtis: pcoa.loadings & pcoa.axes

» β-diversity measurements: Tree analysis

- Jclass newick format sample relation tree
- Jest newick format sample relation tree
- Thetayc newick format sample relation tree
- Braycurtis newick format sample relation tree

- Jclass newick format sample relation tree
- Jest newick format sample relation tree
- Thetayc newick format sample relation tree
- Braycurtis newick format sample relation tree

» β-diversity measurements: NMDs analysis

### Without subsampling or rarefying

### With subsampling or rarefying

» Parsimony testing

- Jclass tre.parsimony & tre.psummary
- Jest tre.parsimony & tre.psummary
- Thetayc tre.parsimony & tre.psummary
- Braycurtis tre.parsimony & tre.psummary

- Jclass tre.parsimony & tre.psummary
- Jest tre.parsimony & tre.psummary
- Thetayc tre.parsimony & tre.psummary
- Braycurtis tre.parsimony & tre.psummary

» Unifrac.weighted

» Unifrac.unweighted

- Jclass unweighted & uwsummary
- Jest unweighted & uwsummary
- Thetayc unweighted & uwsummary
- Braycurtis unweighted & uwsummary

- Jclass unweighted & uwsummary
- Jest unweighted & uwsummary
- Thetayc unweighted & uwsummary
- Braycurtis unweighted & uwsummary

» AMOVA(Analysis of Molecular Variance)

- Jclass amova testing result
- Jest amova testing result
- Thetayc amova testing result
- Braycurtis amova testing result

- Jclass amova testing result
- Jest amova testing result
- Thetayc amova testing result
- Braycurtis amova testing result

» HOMOVA (Homogenity of Molecular Variance)

- Jclass homova testing result
- Jest homova testing result
- Thetayc homova testing result
- Braycurtis homova testing result

- Jclass homova testing result
- Jest homova testing result
- Thetayc homova testing result
- Braycurtis homova testing result